2nd Edition of Course on Computational Biosciences using HPC systems (UCIBIO / LAQV / INCD)ONSITE

6 Feb 2024, 09:00 → 8 Feb 2024, 17:30 UTC

Sala 204 (Faculdade de Ciências e Tecnologia, Edifício Departamental)

UCIBIO members in collaboration with LIP, will instruct a hand-on course tailored for researchers that are interested in starting High Performance Computing projects. The course will cover the following modules:

 

OPTIONAL Module 0:
Introduction to HPC (Feb 5, 10:00 - 12:00)
(required module for the users who don't have any knoledge about HPC)

Online hand-on tutorial on which users will learn how to use the INCD HPC cluster. 

 

Module 1 (OMICS):

High-throughput Sequencing Data (Feb 6, 09:00 – 12:30)

Transcriptome Assembly (Feb 6, 14:00 – 17:30)

Phylogenomics (Feb 7, 09:00 – 12:30)

 

 

Module 2 (Molecular Modeling)

Structure-based Virtual Screening (Feb 7, 14:00 – 17:30)

Molecular Dynamics (Feb 8, 09:00 – 12:30)

Hybrid Quantum Mechanics/Molecular Mechanics (Feb 8, 14:00 – 17:30)

Getting to DQ - FCT-NOVA.pdf

Tuesday, 6 February

09:00 → 10:45 OMICS: High-throughput Sequencing Data

Convener: Ana Rita Grosso (fct.unl.pt)

WorKShop_M2.pdf

WorKShop_M_Tutorial.txt

10:45 → 11:00 Coffee Break

11:00 → 12:30 OMICS: High-throughput Sequencing Data

Convener: Ana Rita Grosso (fct.unl.pt)

WorKShop_M2.pdf

WorKShop_M_Tutorial.txt

12:30 → 14:00 Lunch

14:00 → 15:30 OMICS: Transcriptome Assembly

Convener: Pedro M. Costa (FCT-NOVA)

WorKShop_M2.pdf

WorKShop_M_Tutorial.txt

15:30 → 15:45 Coffee Break

15:45 → 17:30 OMICS: Transcriptome Assembly

Convener: Pedro M. Costa (FCT-NOVA)

WorKShop_M2.pdf

WorKShop_M_Tutorial.txt

Wednesday, 7 February

09:00 → 10:45 OMICS: Phylogenomics

Convener: Dr Patrícia H Brito (UCIBIO, NOVA Science and Technology, Universidade NOVA de Lisboa)

WorKShop_M2.pdf

WorKShop_M_Tutorial.txt

10:45 → 11:00 Coffee Break

11:00 → 12:30 OMICS: Phylogenomics

Convener: Dr Patrícia H Brito (UCIBIO, NOVA Science and Technology, Universidade NOVA de Lisboa)

WorKShop_M2.pdf

WorKShop_M_Tutorial.txt

12:30 → 14:00 Lunch

14:00 → 15:30 Molecular Modeling: Structure-based Virtual Screening

Convener: Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)

15:30 → 15:45 Coffee Break

15:45 → 17:30 Molecular Modeling: Structure-based Virtual Screening

Convener: Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)

Thursday, 8 February

09:00 → 10:45 Molecular Modeling: Molecular Dynamics

Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)

10:45 → 11:00 Coffee Break

11:00 → 12:30 Molecular Modeling: Molecular Dynamics

Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)

12:30 → 14:00 Lunch

14:00 → 15:30 Molecular Modeling: Hybrid Quantum Mechanics/Molecular Mechanics

Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)

15:30 → 15:45 Coffee Break

15:45 → 17:30 Molecular Modeling: Hybrid Quantum Mechanics/Molecular Mechanics

Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)