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3nd Edition of Course on Computational Biosciences (UCIBIO / LAQV / CNCA/ LIP)

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Sala 204 (Faculdade de Ciências e Tecnologia, Edifício Departamental)

Sala 204

Faculdade de Ciências e Tecnologia, Edifício Departamental

Departamento de Química - NOVA SST Campus de Caparica 2829-516 Caparica Portugal
Description

UCIBIO members, in collaboration with LIP and CNCA, will instruct a hands-on course tailored for researchers who are interested in starting projects that require high computational power. The course will cover the following modules:

 

OPTIONAL Module 0:
Introduction to job submission (Jan 30, 10:00 - 12:00)
(required module for the users who don't have any knowledge about using a cluster for job submission)

Online hand-on tutorial on which users will learn how to use the INCD HPC cluster. 

 

Module 1 (OMICS):

High-throughput Sequencing Data (Feb 4, 09:00 – 12:30)

Transcriptome Assembly (Feb 4, 14:00 – 17:30)

Phylogenomics (Feb 5, 09:00 – 12:30)

 

 

Module 2 (Molecular Modeling)

Structure-based Virtual Screening (Feb 5, 14:00 – 17:30)

Molecular Dynamics (Feb 6, 09:00 – 12:30)

Hybrid Quantum Mechanics/Molecular Mechanics (Feb 6, 14:00 – 17:30)

  • Wednesday 4 February
    • OMICS: High-throughput Sequencing Data
      Convener: Ana Rita Grosso (fct.unl.pt)
    • 10:45
      Coffee Break
    • OMICS: High-throughput Sequencing Data
      Convener: Ana Rita Grosso (fct.unl.pt)
    • 12:30
      Lunch
    • OMICS: Transcriptome Assembly
      Convener: Pedro M. Costa (FCT-NOVA)
    • 15:30
      Coffee Break
    • OMICS: Transcriptome Assembly
      Convener: Pedro M. Costa (FCT-NOVA)
  • Thursday 5 February
    • OMICS: Phylogenomics
      Convener: Dr Patrícia H Brito (UCIBIO, NOVA Science and Technology, Universidade NOVA de Lisboa)
    • 10:45
      Coffee Break
    • OMICS: Phylogenomics
      Convener: Dr Patrícia H Brito (UCIBIO, NOVA Science and Technology, Universidade NOVA de Lisboa)
    • 12:30
      Lunch
    • Molecular Modeling: Structure-based Virtual Screening
      Convener: Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 15:30
      Coffee Break
    • Molecular Modeling: Structure-based Virtual Screening
      Convener: Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
  • Friday 6 February
    • Molecular Modeling: Molecular Dynamics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 10:45
      Coffee Break
    • Molecular Modeling: Molecular Dynamics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 12:30
      Lunch
    • Molecular Modeling: Hybrid Quantum Mechanics/Molecular Mechanics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 15:30
      Coffee Break
    • Molecular Modeling: Hybrid Quantum Mechanics/Molecular Mechanics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
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